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20 Commits

Author SHA1 Message Date
Zygo Blaxell
8f92b1dacc BeesRangePair: drop the _really_ expensive toxic extent workaround
We were doing a `LOGICAL_INO` ioctl on every _block_ of a matching extent,
just to see how long it takes.  It takes a while!

This could be modified to do an ioctl with the `IGNORE_OFFSET` flag,
once per new extent, but the kernel bug was fixed a long time ago, so
we can start removing all the toxic extent code.

Signed-off-by: Zygo Blaxell <bees@furryterror.org>
2024-11-30 23:30:33 -05:00
Zygo Blaxell
97eab9655c types: add shrink_begin and shrink_end methods for BeesFileRange and BeesRangePair
These allow trimming of overlapping dedupes.

Signed-off-by: Zygo Blaxell <bees@furryterror.org>
2024-11-30 23:30:33 -05:00
Zygo Blaxell
8d08a3c06f readahead: inject some sanity at the foundation of an insane architecture
This solves some of the worst problems with bees reads:

1.  The kernel readahead doesn't work.  More precisely, it's much better
adapted for a very different use case:  a single thread alternating
between reading a file sequentially and processing the data that was read.
bees has multiple threads which compete for access to IO and then issue
reads in random order immediately after the call to readahead.  The kernel
uses idle ioprio scheduling for the readaheads, so the readaheads get
preempted by the random reads, or cancels the readaheads because the
data access pattern isn't sequential after the readahead was issued.

2.  Seeking drives perform terribly with multiple competing readers,
especially with btrfs striped profiles where the iops are broken into
tiny stripe-sized pieces.  At one point I intended to read the btrfs
device map and figure out which devices can be read in parallel, but to
make that useful, the user needs to have an array with multiple drives
in single profile, or 4+ drives in raid1 profile.  In all other cases,
the elaborate calculations always return the same result:  there can be
only one reader at a time.

This commit fixes both problems:

1.  Don't use the kernel readahead.  Use normal reads into a dummy
buffer instead.

2.  Allow only one thread to readahead at any time.  Once the read is
completed, the data is in the page cache, and all the random-order small
reads that bees does will hit the page cache, not a spinning disk.
In some cases we need to read two things close together, so add a
`bees_readahead_pair` which holds one lock across both reads.

Signed-off-by: Zygo Blaxell <bees@furryterror.org>
2024-11-30 23:30:33 -05:00
Zygo Blaxell
23c16aa978 BeesFileRange: coalesce is not used, subtract was never implemented
Less dead code to maintain.  Also more Doxygen comments.

Signed-off-by: Zygo Blaxell <bees@furryterror.org>
2022-12-20 20:50:59 -05:00
Zygo Blaxell
fbf6b395c8 types: member m_fd in BeesFileRange must be protected against data races
We had an unfortunate pattern of:

	const BeesFileRange bfr;
	shared_ptr<BeesContext> ctx;
	// ...
	BEESNOTE("foo " << bfr);
	bfr.fd(ctx);
	BEESNOTE("foo after opening: " << bfr);

If dump_status started running after the first BEESNOTE, but before
the second, then bfr.fd() might expose a single Fd object's shared_ptr
member to two threads at the same time (the thread running dump_status
and the thread running BEESNOTE) without protection by a lock.  One of
the threads would see a partially-initialized Fd object, and the other
thread would crash on an assertion failure, e.g.

	#0  __GI_raise (sig=sig@entry=6) at ../sysdeps/unix/sysv/linux/raise.c:50
	#1  0x00007f4c4fde5537 in __GI_abort () at abort.c:79
	#2  0x00007f4c4fde540f in __assert_fail_base (fmt=0x7f4c4ff4e128 "%s%s%s:%u: %s%sAssertion `%s' failed.\n%n", assertion=0x5557605629dd "!m_destroyed", file=0x5557605627c0 "../include/crucible/namedptr.h", line=77, function=<optimized out>) at assert.c:92
	#3  0x00007f4c4fdf4662 in __GI___assert_fail (assertion=assertion@entry=0x5557605629dd "!m_destroyed", file=file@entry=0x5557605627c0 "../include/crucible/namedptr.h", line=line@entry=77,
	    function=function@entry=0x555760562970 "crucible::NamedPtr<Return, Arguments>::Value::~Value() [with Return = crucible::IOHandle; Arguments = {int}]") at assert.c:101
	#4  0x00005557605306f6 in crucible::NamedPtr<crucible::IOHandle, int>::Value::~Value (this=0x7f4a3c2ff0d0, __in_chrg=<optimized out>) at ../include/crucible/namedptr.h:77
	#5  0x00005557605137da in std::_Sp_counted_base<(__gnu_cxx::_Lock_policy)2>::_M_release (this=0x7f4a3c2ff0c0) at /usr/include/c++/10/bits/shared_ptr_base.h:151
	#6  std::_Sp_counted_base<(__gnu_cxx::_Lock_policy)2>::_M_release (this=0x7f4a3c2ff0c0) at /usr/include/c++/10/bits/shared_ptr_base.h:151
	#7  std::__shared_count<(__gnu_cxx::_Lock_policy)2>::~__shared_count (this=0x7f4c4c5b5f28, __in_chrg=<optimized out>) at /usr/include/c++/10/bits/shared_ptr_base.h:733
	#8  std::__shared_ptr<crucible::IOHandle, (__gnu_cxx::_Lock_policy)2>::~__shared_ptr (this=0x7f4c4c5b5f20, __in_chrg=<optimized out>) at /usr/include/c++/10/bits/shared_ptr_base.h:1183
	#9  std::shared_ptr<crucible::IOHandle>::~shared_ptr (this=0x7f4c4c5b5f20, __in_chrg=<optimized out>) at /usr/include/c++/10/bits/shared_ptr.h:121
	#10 crucible::Fd::~Fd (this=0x7f4c4c5b5f20, __in_chrg=<optimized out>) at ../include/crucible/fd.h:46
	#11 BeesFileRange::file_size (this=0x7f4c4e5ba4a0) at bees-types.cc:156
	#12 0x0000555760513950 in operator<< (os=..., bfr=...) at bees-types.cc:80
	#13 0x000055576050d662 in std::function<void (std::ostream&)>::operator()(std::ostream&) const (__args#0=..., this=0x7f4c4e5b9f60) at /usr/include/c++/10/bits/std_function.h:622
	#14 BeesNote::get_status[abi:cxx11]() () at bees-trace.cc:165
	#15 0x00005557604c9676 in BeesContext::dump_status (this=0x5557611c4de0) at bees-context.cc:89
	#16 0x00005557605206fb in std::function<void ()>::operator()() const (this=this@entry=0x7f4c4c5b65f0) at /usr/include/c++/10/bits/std_function.h:622
	#17 crucible::catch_all(std::function<void ()> const&, std::function<void (std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)> const&) (f=..., explainer=...) at error.cc:55
	#18 0x000055576050aaa7 in operator() (__closure=0x5557611c52c8) at bees-thread.cc:22
	#19 0x00007f4c501beed0 in ?? () from /usr/lib/x86_64-linux-gnu/libstdc++.so.6
	#20 0x00007f4c502c8ea7 in start_thread (arg=<optimized out>) at pthread_create.c:477
	#21 0x00007f4c4febddef in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:95

Fix by making BeesFileRange::m_fd really const (not just mutable),
then fix all the broken code referencing it.

Signed-off-by: Zygo Blaxell <bees@furryterror.org>
2021-12-19 15:10:02 -05:00
Zygo Blaxell
20b8f8ae0b bees: use helper function for readahead
There seem to be multiple ways to do readahead in Linux, and only some
of them work.  Hopefully reading the actual data is one of them.

This is an attempt to avoid page-by-page reads in the generic dedupe code.
We load both extents into the VFS cache (read sequentially) and hope they
are still there by the time we call dedupe on them.

We also call readahead(2) and hopefully that either helps or does nothing.

Signed-off-by: Zygo Blaxell <bees@furryterror.org>
2021-06-11 20:56:54 -04:00
Zygo Blaxell
0bbaddd54c docs: finally concede that the consensus spelling is "dedupe"
Change documentation and comments to use the word "dedupe," not "dedup"
as found in circa-3.15 kernel sources.

No changes in code or program output--if they used "dedup" before, they
will continue to be spelled "dedup" now.

Signed-off-by: Zygo Blaxell <bees@furryterror.org>
2021-06-11 20:49:15 -04:00
Zygo Blaxell
7117cb40c5 hash: prepare for user-selectable hash functions
Localize the hash function in bees to a single spot to make it easier
to change later (or at runtime).

Remove some code that was using a property of CRC as an optimization.
The optimization doesn't work for other hash functions, and running the
CRC function takes more CPU time than the optimization saved.

Signed-off-by: Zygo Blaxell <bees@furryterror.org>
2019-06-12 22:48:06 -04:00
Zygo Blaxell
96eb100ded bees: use readahead instead of posix_fadvise
Other btrfs utils use readahead() not posix_fadvise().

There does not appear to be a performance or correctness difference
between the three (none, posix_fadvise, or readahead()).

Signed-off-by: Zygo Blaxell <bees@furryterror.org>
2018-09-14 23:50:00 -04:00
Zygo Blaxell
082f04818f BeesBlockData: fix data type issues
Not sure if these cause any problems, but they are theoretically
incorrect data types.

Signed-off-by: Zygo Blaxell <bees@furryterror.org>
2018-02-28 23:58:28 -05:00
Zygo Blaxell
4ecd467ca0 BeesBlockData: don't leak file contents in the log
The data field of BeesBlockData is only interesting to those who want
to debug the BeesBlockData implementation or other battle-tested parts
of bees.  Users who want to do this can modify and rebuild the source
to enable the output.

To everyone else, the data field is a huge, ongoing infoleak through
the log.

Don't bother with an option, just output the length of the data field
and nothing else.

Fixes:  https://github.com/Zygo/bees/issues/53

Signed-off-by: Zygo Blaxell <bees@furryterror.org>
2018-01-26 23:48:04 -05:00
Zygo Blaxell
71be53eff6 types: don't throw an exception when it's likely we are already reporting an exception
Empty files are a thing that can happen.  Don't bomb out just reporting
one's existence.

Signed-off-by: Zygo Blaxell <bees@furryterror.org>
2018-01-26 23:48:04 -05:00
Zygo Blaxell
38ccf5c921 counters: track pair growing time
When we find a matching block we attempt to extend ("grow") the matched
pair around the first matching block.  This function takes the IO hit of
reading the second extent from each duplicate extent pair.  It's also
very slow--too many allocations, too small reads, reads in the wrong
order, an order of magnitude too many calls to TREE_SEARCH_V2, and it
is usually in the top 3 most frequent PERFORMANCE warnings.

Start tracking the running time of grows using the pairforward_ms
and pairbackward_ms counters so that we can compare it to various
replacements.

Signed-off-by: Zygo Blaxell <bees@furryterror.org>
2018-01-20 13:04:56 -05:00
Kai Krakow
677da5de45 Logging: Add log levels to output
This commit adds log levels to the output. In systemd, it makes colored
lines, otherwise it's probably just a number. Bees is very chatty, so
this paves the road for log level filtering.

Signed-off-by: Kai Krakow <kai@kaishome.de>
2018-01-18 23:41:29 +01:00
Zygo Blaxell
8cde833863 bees: make a thread note when we read data
Reads can block indefinitely due to bugs, low io priority, or poor
storage performance.  Record the block origin data in the thread state
so we can see which reads are problematic.

Signed-off-by: Zygo Blaxell <bees@furryterror.org>
(cherry picked from commit f56f736d28970a0f03ee887a5bd5515cc749d413)
2017-06-17 10:15:11 -04:00
Zygo Blaxell
e0951ed4ba bees: use C++11 syntax for constant initializers
This lets us use more default constructors.

Signed-off-by: Zygo Blaxell <bees@furryterror.org>
(cherry picked from commit 8a932a632ff4602a0357ed5fbcd3f86b6bc50283)
2017-06-17 10:15:11 -04:00
Zygo Blaxell
c479b361cd bees: remove file open serialization mutex
It is no longer necessary.

Signed-off-by: Zygo Blaxell <bees@furryterror.org>
(cherry picked from commit 5c9104555768801701df15f512c4d3d7c579398b)
2017-06-17 10:15:11 -04:00
Zygo Blaxell
c6c3990d19 bees: types: improve serialization of byte ranges
Use () instead of [] when the respective end of the byte range touches
the beginning or end of the file.  Also omit the '0' at beginning of
file.

Signed-off-by: Zygo Blaxell <bees@furryterror.org>
(cherry picked from commit 3023b7f57a3003242bc770bcfe55f666227680ff)
2017-06-17 10:15:11 -04:00
Zygo Blaxell
db8ea92133 bees: fix further instances of copy-after-unlock bug
Before:

        unique_lock<mutex> lock(some_mutex);
        // run lock.~unique_lock() because return
        // return reference to unprotected heap
        return foo[bar];

After:

        unique_lock<mutex> lock(some_mutex);
        // make copy of object on heap protected by mutex lock
        auto tmp_copy = foo[bar];
        // run lock.~unique_lock() because return
        // pass locally allocated object to copy constructor
        return tmp_copy;

Signed-off-by: Zygo Blaxell <bees@furryterror.org>
2017-01-22 22:00:27 -05:00
Zygo Blaxell
cca0ee26a8 bees: remove local cruft, throw at github 2016-11-17 12:12:13 -05:00